IL_6XZA_058

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6XZA|1|A1|C|1400, 6XZA|1|A1|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_058 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1184

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6XZA|1|A1|C|1399
6XZA|1|A1|C|1400
6XZA|1|A1|G|1401
*
6XZA|1|A1|C|1501
6XZA|1|A1|A|1502
6XZA|1|A1|A|1503
6XZA|1|A1|G|1504

Current chains

Chain A1

16S rRNA

Nearby chains

Chain f2

Transfer RNA; tRNA