IL_6XZA_075

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_075 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.0752

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6XZA|1|A2|U|293
6XZA|1|A2|A|294
6XZA|1|A2|G|295
*
6XZA|1|A2|C|343
6XZA|1|A2|A|344
6XZA|1|A2|A|345
6XZA|1|A2|A|346
6XZA|1|A2|A|347

Current chains

Chain A2

23S rRNA

Nearby chains

Chain U2

50S ribosomal protein L24