IL_6XZA_084

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_084 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0599

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6XZA|1|A2|U|703
6XZA|1|A2|G|704
6XZA|1|A2|A|705
6XZA|1|A2|A|706
6XZA|1|A2|G|707
*
6XZA|1|A2|U|724
6XZA|1|A2|G|725
6XZA|1|A2|G|726
6XZA|1|A2|A|727
6XZA|1|A2|G|728

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2