IL_6XZA_088

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

6XZA|1|A2|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_088 not in the Motif Atlas

Homologous match to IL_5J7L_268

Geometric discrepancy: 0.0867

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6XZA|1|A2|U|847
6XZA|1|A2|C|848
*
6XZA|1|A2|G|930
6XZA|1|A2|U|931
6XZA|1|A2|U|932
6XZA|1|A2|A|933

Current chains

Chain A2

23S rRNA

Nearby chains

Chain Z2

50S ribosomal protein L30