3D structure

PDB id
6XZA (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZA_090 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.0582
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6XZA|1|A2|G|856
6XZA|1|A2|G|857
6XZA|1|A2|G|858
6XZA|1|A2|G|859
6XZA|1|A2|U|860
6XZA|1|A2|A|861
6XZA|1|A2|G|862
*
6XZA|1|A2|C|915
6XZA|1|A2|G|916
6XZA|1|A2|A|917
6XZA|1|A2|A|918
6XZA|1|A2|U|919
6XZA|1|A2|A|920
6XZA|1|A2|C|921

Current chains

Chain A2
23S rRNA

Nearby chains

Chain B2
5S ribosomal RNA; 5S rRNA
Chain M2
50S ribosomal protein L16
Chain W2
50S ribosomal protein L27
Chain Z2
50S ribosomal protein L30

Coloring options:


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