IL_6XZA_090

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_090 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.0582

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6XZA|1|A2|G|856
6XZA|1|A2|G|857
6XZA|1|A2|G|858
6XZA|1|A2|G|859
6XZA|1|A2|U|860
6XZA|1|A2|A|861
6XZA|1|A2|G|862
*
6XZA|1|A2|C|915
6XZA|1|A2|G|916
6XZA|1|A2|A|917
6XZA|1|A2|A|918
6XZA|1|A2|U|919
6XZA|1|A2|A|920
6XZA|1|A2|C|921

Current chains

Chain A2

23S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain M2

50S ribosomal protein L16

Chain W2

50S ribosomal protein L27

Chain Z2

50S ribosomal protein L30