IL_6XZA_097

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_097 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.053

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6XZA|1|A2|U|1004
6XZA|1|A2|C|1005
6XZA|1|A2|C|1006
6XZA|1|A2|C|1007
6XZA|1|A2|A|1008
6XZA|1|A2|A|1009
6XZA|1|A2|A|1010
6XZA|1|A2|G|1011
*
6XZA|1|A2|C|1150
6XZA|1|A2|A|1151

Current chains

Chain A2

23S rRNA

Nearby chains

Chain J2

50S ribosomal protein L13

Chain Q2

50S ribosomal protein L20