IL_6XZA_102

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_102 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1175

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XZA|1|A2|G|1038
6XZA|1|A2|A|1039
6XZA|1|A2|A|1040
6XZA|1|A2|G|1041
*
6XZA|1|A2|C|1114
6XZA|1|A2|G|1115
6XZA|1|A2|G|1116
6XZA|1|A2|C|1117

Current chains

Chain A2

23S rRNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain M2

50S ribosomal protein L16

Chain V2

50S ribosomal protein L25