IL_6XZA_106

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6XZA|1|A2|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_106 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.0725

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6XZA|1|A2|C|1196
6XZA|1|A2|G|1197
6XZA|1|A2|U|1198
*
6XZA|1|A2|A|1247
6XZA|1|A2|G|1248
6XZA|1|A2|U|1249
6XZA|1|A2|G|1250

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain L2

50S ribosomal protein L15

Chain Q2

50S ribosomal protein L20