IL_6XZA_108

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6XZA|1|A2|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_108 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0615

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6XZA|1|A2|C|1208
6XZA|1|A2|U|1209
6XZA|1|A2|G|1210
6XZA|1|A2|C|1211
6XZA|1|A2|G|1212
6XZA|1|A2|A|1213
6XZA|1|A2|A|1214
6XZA|1|A2|G|1215
*
6XZA|1|A2|U|1234
6XZA|1|A2|G|1235
6XZA|1|A2|G|1236
6XZA|1|A2|A|1237
6XZA|1|A2|G|1238

Current chains

Chain A2

23S rRNA

Nearby chains

Chain Q2

50S ribosomal protein L20