IL_6XZA_119

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

6XZA|1|A2|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_119 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.0693

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6XZA|1|A2|U|1468
6XZA|1|A2|A|1469
6XZA|1|A2|A|1470
6XZA|1|A2|G|1471
*
6XZA|1|A2|U|1520
6XZA|1|A2|G|1521
6XZA|1|A2|A|1522
6XZA|1|A2|U|1523
6XZA|1|A2|G|1524

Current chains

Chain A2

23S rRNA

Nearby chains