IL_6XZA_160

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6XZA|1|A2|G|2576, 6XZA|1|A2|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_160 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0674

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6XZA|1|A2|C|2510
6XZA|1|A2|U|2511
6XZA|1|A2|C|2512
*
6XZA|1|A2|G|2574
6XZA|1|A2|C|2575
6XZA|1|A2|G|2576
6XZA|1|A2|A|2577
6XZA|1|A2|G|2578

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain a2

50S ribosomal protein L32