3D structure

PDB id
6XZA (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GAAC*G(PSU)(PSU)C
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZA_163 not in the Motif Atlas
Geometric match to IL_3WBM_002
Geometric discrepancy: 0.3431
The information below is about IL_3WBM_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6XZA|1|A2|G|2588
6XZA|1|A2|A|2589
6XZA|1|A2|A|2590
6XZA|1|A2|C|2591
*
6XZA|1|A2|G|2603
6XZA|1|A2|PSU|2604
6XZA|1|A2|PSU|2605
6XZA|1|A2|C|2606

Current chains

Chain A2
23S rRNA

Nearby chains

Chain C2
50S ribosomal protein L2
Chain f2
Transfer RNA; tRNA

Coloring options:


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