IL_6XZA_166

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_166 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0619

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6XZA|1|A2|C|2652
6XZA|1|A2|U|2653
6XZA|1|A2|A|2654
6XZA|1|A2|G|2655
6XZA|1|A2|U|2656
6XZA|1|A2|A|2657
6XZA|1|A2|C|2658
*
6XZA|1|A2|G|2663
6XZA|1|A2|G|2664
6XZA|1|A2|A|2665
6XZA|1|A2|C|2666
6XZA|1|A2|C|2667
6XZA|1|A2|G|2668

Current chains

Chain A2

23S rRNA

Nearby chains

Chain G2

50S ribosomal protein L6