IL_6XZA_170

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

6XZA|1|A2|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_170 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0501

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6XZA|1|A2|G|2737
6XZA|1|A2|A|2738
6XZA|1|A2|U|2739
6XZA|1|A2|A|2740
6XZA|1|A2|A|2741
6XZA|1|A2|G|2742
*
6XZA|1|A2|C|2762
6XZA|1|A2|G|2763
6XZA|1|A2|A|2764
6XZA|1|A2|A|2765
6XZA|1|A2|A|2766
6XZA|1|A2|C|2767

Current chains

Chain A2

23S rRNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain J2

50S ribosomal protein L13

Chain e2

50S ribosomal protein L36