IL_6XZA_178
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XZA_178 not in the Motif Atlas
- Geometric match to IL_5J7L_358
- Geometric discrepancy: 0.0704
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
6XZA|1|B2|A|34
6XZA|1|B2|C|35
6XZA|1|B2|C|36
6XZA|1|B2|C|37
6XZA|1|B2|C|38
*
6XZA|1|B2|G|44
6XZA|1|B2|A|45
6XZA|1|B2|A|46
6XZA|1|B2|C|47
6XZA|1|B2|U|48
Current chains
- Chain B2
- 5S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain F2
- 50S ribosomal protein L5
- Chain O2
- 50S ribosomal protein L18
Coloring options: