IL_6XZA_182

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UCC*GAGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_182 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.327

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6XZA|1|A1|U|997
6XZA|1|A1|C|998
6XZA|1|A1|C|999
*
6XZA|1|A1|G|1041
6XZA|1|A1|A|1042
6XZA|1|A1|G|1043
6XZA|1|A1|A|1044

Current chains

Chain A1

16S rRNA

Nearby chains