IL_6XZA_186

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_186 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0385

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6XZA|1|A2|G|1666
6XZA|1|A2|G|1667
6XZA|1|A2|A|1668
6XZA|1|A2|A|1669
6XZA|1|A2|C|1670
6XZA|1|A2|U|1671
6XZA|1|A2|A|1672
6XZA|1|A2|G|1673
6XZA|1|A2|G|1674
*
6XZA|1|A2|C|1990
6XZA|1|A2|U|1991
6XZA|1|A2|G|1992
6XZA|1|A2|U|1993
6XZA|1|A2|C|1994

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain K2

50S ribosomal protein L14