IL_6XZA_187

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0596

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6XZA|1|A2|U|1851
6XZA|1|A2|U|1852
6XZA|1|A2|A|1853
6XZA|1|A2|A|1854
6XZA|1|A2|U|1855
6XZA|1|A2|U|1856
6XZA|1|A2|G|1857
6XZA|1|A2|A|1858
6XZA|1|A2|U|1859
6XZA|1|A2|G|1860
*
6XZA|1|A2|U|1882
6XZA|1|A2|U|1883
6XZA|1|A2|G|1884
6XZA|1|A2|A|1885
6XZA|1|A2|U|1886
6XZA|1|A2|C|1887
6XZA|1|A2|G|1888
6XZA|1|A2|A|1889
6XZA|1|A2|A|1890
6XZA|1|A2|G|1891

Current chains

Chain A2

23S rRNA

Nearby chains