3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CCU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_078 not in the Motif Atlas
Geometric match to IL_5J7L_257
Geometric discrepancy: 0.0568
The information below is about IL_5J7L_257
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

6XZB|1|A2|C|564
6XZB|1|A2|C|565
6XZB|1|A2|U|566
*
6XZB|1|A2|A|575
6XZB|1|A2|U|576
6XZB|1|A2|G|577

Current chains

Chain A2
23S rRNA

Nearby chains

Chain E2
50S ribosomal protein L4
Chain L2
50S ribosomal protein L15
Chain Q2
50S ribosomal protein L20
Chain R2
50S ribosomal protein L21

Coloring options:


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