IL_6XZB_078

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_078 not in the Motif Atlas

Geometric match to IL_5J7L_257

Geometric discrepancy: 0.0568

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6XZB|1|A2|C|564
6XZB|1|A2|C|565
6XZB|1|A2|U|566
*
6XZB|1|A2|A|575
6XZB|1|A2|U|576
6XZB|1|A2|G|577

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain L2

50S ribosomal protein L15

Chain Q2

50S ribosomal protein L20

Chain R2

50S ribosomal protein L21