IL_6XZB_099

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6XZB|1|A2|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_099 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0555

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6XZB|1|A2|U|1018
6XZB|1|A2|U|1019
6XZB|1|A2|A|1020
6XZB|1|A2|A|1021
6XZB|1|A2|G|1022
6XZB|1|A2|U|1023
6XZB|1|A2|G|1024
*
6XZB|1|A2|C|1140
6XZB|1|A2|U|1141
6XZB|1|A2|A|1142
6XZB|1|A2|A|1143
6XZB|1|A2|A|1144

Current chains

Chain A2

23S rRNA

Nearby chains

Chain J2

50S ribosomal protein L13

Chain e2

50S ribosomal protein L36