IL_6XZB_104

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6XZB|1|A2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_104 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1257

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

6XZB|1|A2|G|1059
6XZB|1|A2|U|1060
6XZB|1|A2|U|1061
6XZB|1|A2|G|1062
*
6XZB|1|A2|C|1076
6XZB|1|A2|A|1077
6XZB|1|A2|U|1078
6XZB|1|A2|C|1079

Current chains

Chain A2

23S rRNA

Nearby chains

Chain H2

50S ribosomal protein L10

Chain I2

50S ribosomal protein L11