IL_6XZB_133

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6XZB|1|A2|A|1801, 6XZB|1|A2|C|1816, 6XZB|1|A2|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0412

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6XZB|1|A2|U|1798
6XZB|1|A2|G|1799
6XZB|1|A2|C|1800
6XZB|1|A2|A|1801
6XZB|1|A2|A|1802
6XZB|1|A2|A|1803
6XZB|1|A2|C|1804
*
6XZB|1|A2|G|1813
6XZB|1|A2|G|1814
6XZB|1|A2|A|1815
6XZB|1|A2|C|1816
6XZB|1|A2|G|1817
6XZB|1|A2|U|1818
6XZB|1|A2|A|1819
6XZB|1|A2|U|1820
6XZB|1|A2|A|1821

Current chains

Chain A2

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2