IL_6XZB_165

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6XZB|1|A2|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_165 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.071

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6XZB|1|A2|C|2636
6XZB|1|A2|U|2637
6XZB|1|A2|G|2638
6XZB|1|A2|A|2639
6XZB|1|A2|G|2640
*
6XZB|1|A2|C|2774
6XZB|1|A2|G|2775
6XZB|1|A2|A|2776
6XZB|1|A2|G|2777
6XZB|1|A2|A|2778
6XZB|1|A2|U|2779
6XZB|1|A2|G|2780
6XZB|1|A2|A|2781
6XZB|1|A2|G|2782

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain J2

50S ribosomal protein L13