IL_6XZB_168

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6XZB|1|A2|U|2689, 6XZB|1|A2|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_168 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0607

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6XZB|1|A2|U|2687
6XZB|1|A2|G|2688
6XZB|1|A2|U|2689
6XZB|1|A2|U|2690
6XZB|1|A2|C|2691
*
6XZB|1|A2|G|2718
6XZB|1|A2|G|2719
6XZB|1|A2|U|2720
6XZB|1|A2|A|2721
6XZB|1|A2|G|2722

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain N2

50S ribosomal protein L17

Chain P2

50S ribosomal protein L19