IL_6Y0G_035

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6Y0G|1|L5|G|748, 6Y0G|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_035 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1974

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6Y0G|1|L5|G|745
6Y0G|1|L5|A|746
6Y0G|1|L5|A|747
6Y0G|1|L5|G|748
6Y0G|1|L5|G|749
6Y0G|1|L5|U|750
6Y0G|1|L5|G|751
6Y0G|1|L5|G|752
*
6Y0G|1|L5|U|911
6Y0G|1|L5|G|912
6Y0G|1|L5|U|913
6Y0G|1|L5|U|914
6Y0G|1|L5|A|915
6Y0G|1|L5|C|916
6Y0G|1|L5|A|917
6Y0G|1|L5|G|918
6Y0G|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a