IL_6Y0G_056

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

6Y0G|1|L5|G|1625, 6Y0G|1|L5|A|1637, 6Y0G|1|L5|A|1638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_056 not in the Motif Atlas

Homologous match to IL_5TBW_033

Geometric discrepancy: 0.0999

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6Y0G|1|L5|G|1624
6Y0G|1|L5|G|1625
6Y0G|1|L5|G|1626
*
6Y0G|1|L5|U|1636
6Y0G|1|L5|A|1637
6Y0G|1|L5|A|1638
6Y0G|1|L5|U|1639
6Y0G|1|L5|C|1640

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37