IL_6Y0T_002

3D structure

PDB id

6Y0T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Sarcin Ricin Loop, mutant C2666A U2653G C2667A

Experimental method

X-RAY DIFFRACTION

Resolution

1.393 Å

Loop

Sequence

CGAGUAC*GGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0T_002 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.1238

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6Y0T|1|B|C|2652
6Y0T|1|B|G|2653
6Y0T|1|B|A|2654
6Y0T|1|B|G|2655
6Y0T|1|B|U|2656
6Y0T|1|B|A|2657
6Y0T|1|B|C|2658
*
6Y0T|1|B|G|2663
6Y0T|1|B|G|2664
6Y0T|1|B|A|2665
6Y0T|1|B|A|2666
6Y0T|1|B|A|2667
6Y0T|1|B|G|2668

Current chains

Chain B

RNA (27-MER)

Nearby chains

Chain A

RNA (27-MER)