IL_6Y2L_136

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6Y2L|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_136 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.2331

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6Y2L|1|L5|C|4582
6Y2L|1|L5|C|4583
6Y2L|1|L5|A|4584
6Y2L|1|L5|U|4585
*
6Y2L|1|L5|A|4717
6Y2L|1|L5|G|4718
6Y2L|1|L5|G|4719
6Y2L|1|L5|C|4720
6Y2L|1|L5|G|4721

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a