3D structure

PDB id
6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in hybrid-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUCAUCAG*CUGGAG
Length
14 nucleotides
Bulged bases
6Y57|1|L5|U|1930, 6Y57|1|L5|C|1931, 6Y57|1|L5|G|2055, 6Y57|1|L5|A|2057
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y57_072 not in the Motif Atlas
Geometric match to IL_5TBW_051
Geometric discrepancy: 0.234
The information below is about IL_5TBW_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_27086.1
Basepair signature
cWW-tWW-L-tWW-cWW-L
Number of instances in this motif group
2

Unit IDs

6Y57|1|L5|C|1926
6Y57|1|L5|U|1927
6Y57|1|L5|C|1928
6Y57|1|L5|A|1929
6Y57|1|L5|U|1930
6Y57|1|L5|C|1931
6Y57|1|L5|A|1932
6Y57|1|L5|G|1933
*
6Y57|1|L5|C|2053
6Y57|1|L5|U|2054
6Y57|1|L5|G|2055
6Y57|1|L5|G|2056
6Y57|1|L5|A|2057
6Y57|1|L5|G|2058

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LH
60S ribosomal protein L9
Chain LM
60S ribosomal protein L14
Chain LO
60S ribosomal protein L13a
Chain LS
60S ribosomal protein L18a
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


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