IL_6Y57_087

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_087 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2281

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6Y57|1|L5|C|2589
6Y57|1|L5|G|2590
6Y57|1|L5|A|2591
6Y57|1|L5|U|2592
6Y57|1|L5|C|2593
*
6Y57|1|L5|G|2752
6Y57|1|L5|G|2753
6Y57|1|L5|G|2754
6Y57|1|L5|A|2755
6Y57|1|L5|G|2756

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34