IL_6Y57_264
3D structure
- PDB id
- 6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in hybrid-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6Y57|1|S2|C|1331, 6Y57|1|S2|U|1494, 6Y57|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y57_264 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1578
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6Y57|1|S2|U|1329
6Y57|1|S2|G|1330
6Y57|1|S2|C|1331
6Y57|1|S2|A|1332
6Y57|1|S2|U|1333
6Y57|1|S2|G|1334
6Y57|1|S2|G|1335
*
6Y57|1|S2|U|1492
6Y57|1|S2|C|1493
6Y57|1|S2|U|1494
6Y57|1|S2|G|1495
6Y57|1|S2|U|1496
6Y57|1|S2|G|1497
6Y57|1|S2|A|1498
6Y57|1|S2|U|1499
6Y57|1|S2|G|1500
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain A4
- mRNA
- Chain D4
- Transfer RNA; tRNA
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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