IL_6Y69_081

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y69_081 not in the Motif Atlas

Geometric match to IL_8X5V_001

Geometric discrepancy: 0.2377

The information below is about IL_8X5V_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6Y69|1|A|A|2108
6Y69|1|A|U|2109
6Y69|1|A|G|2110
6Y69|1|A|U|2111
6Y69|1|A|G|2112
6Y69|1|A|U|2113
6Y69|1|A|A|2114
6Y69|1|A|G|2115
6Y69|1|A|G|2116
6Y69|1|A|A|2117
6Y69|1|A|U|2118
6Y69|1|A|A|2119
6Y69|1|A|G|2120
*
6Y69|1|A|C|2178
6Y69|1|A|C|2179
6Y69|1|A|U|2180
6Y69|1|A|U|2181

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain w

Transfer RNA; tRNA