IL_6Y69_097

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6Y69|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y69_097 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0822

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6Y69|1|A|C|2636
6Y69|1|A|U|2637
6Y69|1|A|G|2638
6Y69|1|A|A|2639
6Y69|1|A|G|2640
*
6Y69|1|A|C|2774
6Y69|1|A|G|2775
6Y69|1|A|A|2776
6Y69|1|A|G|2777
6Y69|1|A|A|2778
6Y69|1|A|U|2779
6Y69|1|A|G|2780
6Y69|1|A|A|2781
6Y69|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13