IL_6Y6X_038

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6Y6X|1|L5|G|748, 6Y6X|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_038 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1703

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6Y6X|1|L5|G|745
6Y6X|1|L5|A|746
6Y6X|1|L5|A|747
6Y6X|1|L5|G|748
6Y6X|1|L5|G|749
6Y6X|1|L5|U|750
6Y6X|1|L5|G|751
6Y6X|1|L5|G|752
*
6Y6X|1|L5|U|911
6Y6X|1|L5|G|912
6Y6X|1|L5|U|913
6Y6X|1|L5|U|914
6Y6X|1|L5|A|915
6Y6X|1|L5|C|916
6Y6X|1|L5|A|917
6Y6X|1|L5|G|918
6Y6X|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a