IL_6Y6X_086

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6Y6X|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_086 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2594

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6Y6X|1|L5|U|1957
6Y6X|1|L5|A|1958
6Y6X|1|L5|U|1959
6Y6X|1|L5|A|1960
6Y6X|1|L5|G|1961
6Y6X|1|L5|A|1962
6Y6X|1|L5|C|1963
6Y6X|1|L5|A|1964
6Y6X|1|L5|G|1965
*
6Y6X|1|L5|C|2022
6Y6X|1|L5|C|2023
6Y6X|1|L5|G|2024
6Y6X|1|L5|A|2025
6Y6X|1|L5|A|2026

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40