3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UAUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
6Y6X|1|L5|A|1960
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_086 not in the Motif Atlas
Homologous match to IL_8C3A_057
Geometric discrepancy: 0.2594
The information below is about IL_8C3A_057
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6Y6X|1|L5|U|1957
6Y6X|1|L5|A|1958
6Y6X|1|L5|U|1959
6Y6X|1|L5|A|1960
6Y6X|1|L5|G|1961
6Y6X|1|L5|A|1962
6Y6X|1|L5|C|1963
6Y6X|1|L5|A|1964
6Y6X|1|L5|G|1965
*
6Y6X|1|L5|C|2022
6Y6X|1|L5|C|2023
6Y6X|1|L5|G|2024
6Y6X|1|L5|A|2025
6Y6X|1|L5|A|2026

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LS
60S ribosomal protein L18a
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2693 s