IL_6Y6X_095

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_095 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0844

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6Y6X|1|L5|G|2358
6Y6X|1|L5|U|2359
6Y6X|1|L5|A|2360
6Y6X|1|L5|G|2361
6Y6X|1|L5|U|2362
6Y6X|1|L5|A|2363
6Y6X|1|L5|G|2364
*
6Y6X|1|L5|C|3858
6Y6X|1|L5|G|3859
6Y6X|1|L5|A|3860
6Y6X|1|L5|A|3861
6Y6X|1|L5|A|3862
6Y6X|1|L5|C|3863

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17