IL_6Y6X_153

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_153 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.1111

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6Y6X|1|L5|C|4596
6Y6X|1|L5|U|4597
6Y6X|1|L5|C|4598
6Y6X|1|L5|A|4599
6Y6X|1|L5|G|4600
6Y6X|1|L5|U|4601
6Y6X|1|L5|A|4602
6Y6X|1|L5|C|4603
*
6Y6X|1|L5|G|4608
6Y6X|1|L5|G|4609
6Y6X|1|L5|A|4610
6Y6X|1|L5|A|4611
6Y6X|1|L5|C|4612
6Y6X|1|L5|C|4613
6Y6X|1|L5|G|4614

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain LV

60S ribosomal protein L23