IL_6Y7C_003
3D structure
- PDB id
- 6Y7C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 6Y7C|1|2|A|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y7C_003 not in the Motif Atlas
- Geometric match to IL_4V88_386
- Geometric discrepancy: 0.1505
- The information below is about IL_4V88_386
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
6Y7C|1|2|U|37
6Y7C|1|2|C|38
6Y7C|1|2|A|39
6Y7C|1|2|A|40
6Y7C|1|2|A|41
*
6Y7C|1|2|U|466
6Y7C|1|2|G|467
6Y7C|1|2|A|468
6Y7C|1|2|C|469
6Y7C|1|2|A|470
6Y7C|1|2|A|471
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain J
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S24-A
- Chain t
- Ribosome biogenesis protein TSR1
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