IL_6Y7C_011

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6Y7C|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.164

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6Y7C|1|2|G|143
6Y7C|1|2|U|144
6Y7C|1|2|A|145
6Y7C|1|2|U|146
6Y7C|1|2|A|147
6Y7C|1|2|A|148
6Y7C|1|2|C|149
*
6Y7C|1|2|G|165
6Y7C|1|2|C|166
6Y7C|1|2|U|167
6Y7C|1|2|A|168
6Y7C|1|2|A|169
6Y7C|1|2|U|170
6Y7C|1|2|A|171
6Y7C|1|2|C|172

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain Y

40S ribosomal protein S24-A