IL_6Y7C_028
3D structure
- PDB id
- 6Y7C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUA*UAAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y7C_028 not in the Motif Atlas
- Homologous match to IL_4V88_411
- Geometric discrepancy: 0.26
- The information below is about IL_4V88_411
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.2
- Basepair signature
- cWW-tHS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6Y7C|1|2|G|516
6Y7C|1|2|U|517
6Y7C|1|2|A|518
*
6Y7C|1|2|U|533
6Y7C|1|2|A|534
6Y7C|1|2|A|535
6Y7C|1|2|C|536
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S24-A
- Chain e
- 40S ribosomal protein S30-A
- Chain t
- Ribosome biogenesis protein TSR1
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