IL_6Y7C_030

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_030 not in the Motif Atlas

Geometric match to IL_4YAZ_008

Geometric discrepancy: 0.3143

The information below is about IL_4YAZ_008

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6Y7C|1|2|A|550
6Y7C|1|2|G|551
6Y7C|1|2|G|552
6Y7C|1|2|G|553
6Y7C|1|2|C|554
6Y7C|1|2|A|555
6Y7C|1|2|A|556
6Y7C|1|2|G|557
*
6Y7C|1|2|C|587
6Y7C|1|2|U|588

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain J

40S ribosomal protein S9-A

Chain e

40S ribosomal protein S30-A