IL_6Y7C_039
3D structure
- PDB id
- 6Y7C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUG*CAUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y7C_039 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2639
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6Y7C|1|2|U|748
6Y7C|1|2|U|749
6Y7C|1|2|U|750
6Y7C|1|2|G|751
*
6Y7C|1|2|C|798
6Y7C|1|2|A|799
6Y7C|1|2|U|800
6Y7C|1|2|G|801
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain L
- 40S ribosomal protein S11-A
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
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