IL_6Y7C_054

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_054 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1059

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6Y7C|1|2|G|1111
6Y7C|1|2|G|1112
6Y7C|1|2|A|1113
6Y7C|1|2|G|1114
6Y7C|1|2|U|1115
6Y7C|1|2|A|1116
6Y7C|1|2|U|1117
6Y7C|1|2|G|1118
*
6Y7C|1|2|U|1129
6Y7C|1|2|G|1130
6Y7C|1|2|A|1131
6Y7C|1|2|A|1132
6Y7C|1|2|A|1133
6Y7C|1|2|C|1134

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain t

Ribosome biogenesis protein TSR1