IL_6Y7C_073

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6Y7C|1|2|A|1754

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_073 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3188

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6Y7C|1|2|C|1644
6Y7C|1|2|G|1645
6Y7C|1|2|C|1646
6Y7C|1|2|U|1647
*
6Y7C|1|2|A|1753
6Y7C|1|2|A|1754
6Y7C|1|2|A|1755
6Y7C|1|2|A|1756
6Y7C|1|2|G|1757

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain l

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1