IL_6YAL_015

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6YAL|1|2|U|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_015 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.367

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6YAL|1|2|C|213
6YAL|1|2|A|214
6YAL|1|2|U|215
6YAL|1|2|U|216
*
6YAL|1|2|A|293
6YAL|1|2|C|294
6YAL|1|2|C|295
6YAL|1|2|U|296
6YAL|1|2|C|297
6YAL|1|2|G|298
6YAL|1|2|G|299
6YAL|1|2|G|300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain K

40S ribosomal protein eS8