3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UAUCAA*UGACCACG
Length
14 nucleotides
Bulged bases
6YAL|1|2|U|351, 6YAL|1|2|C|389
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAL_018 not in the Motif Atlas
Homologous match to IL_4V88_402
Geometric discrepancy: 0.1311
The information below is about IL_4V88_402
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

6YAL|1|2|U|349
6YAL|1|2|A|350
6YAL|1|2|U|351
6YAL|1|2|C|352
6YAL|1|2|A|353
6YAL|1|2|A|354
*
6YAL|1|2|U|386
6YAL|1|2|G|387
6YAL|1|2|A|388
6YAL|1|2|C|389
6YAL|1|2|C|390
6YAL|1|2|A|391
6YAL|1|2|C|392
6YAL|1|2|G|393

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain K
40S ribosomal protein eS8
Chain N
40S ribosomal protein uS17
Chain Z
40S ribosomal protein uS12

Coloring options:


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