IL_6YAL_036
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_036 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0908
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6YAL|1|2|C|666
6YAL|1|2|G|667
6YAL|1|2|U|668
6YAL|1|2|A|669
6YAL|1|2|G|670
*
6YAL|1|2|U|1021
6YAL|1|2|C|1022
6YAL|1|2|A|1023
6YAL|1|2|A|1024
6YAL|1|2|G|1025
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain N
- 40S ribosomal protein uS17
- Chain P
- 40S ribosomal protein uS15
- Chain Y
- 40S ribosomal protein uS8
- Chain Z
- 40S ribosomal protein uS12
Coloring options: