IL_6YAL_048

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6YAL|1|2|G|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_048 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.0978

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6YAL|1|2|C|927
6YAL|1|2|G|928
6YAL|1|2|G|929
6YAL|1|2|G|930
6YAL|1|2|G|931
*
6YAL|1|2|C|1003
6YAL|1|2|A|1004
6YAL|1|2|A|1005
6YAL|1|2|G|1006

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein eS1

Chain P

40S ribosomal protein uS15

Chain b

40S ribosomal protein eS26