IL_6YAL_060
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6YAL|1|2|C|1211, 6YAL|1|2|C|1212
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_060 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1259
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6YAL|1|2|A|1210
6YAL|1|2|C|1211
6YAL|1|2|C|1212
6YAL|1|2|A|1213
*
6YAL|1|2|U|1676
6YAL|1|2|C|1677
6YAL|1|2|C|1678
6YAL|1|2|C|1679
6YAL|1|2|U|1680
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain H
- 40S Ribosomal protein uS7
- Chain S
- 40S ribosomal protein uS9
- Chain b
- 40S ribosomal protein eS26
- Chain d
- 40S ribosomal protein eS28
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