3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGG*UCUGUGA
Length
10 nucleotides
Bulged bases
6YAL|1|2|U|1490, 6YAL|1|2|G|1493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAL_069 not in the Motif Atlas
Homologous match to IL_4V88_451
Geometric discrepancy: 0.1355
The information below is about IL_4V88_451
Detailed Annotation
Minor groove platform with extra cWW
Broad Annotation
Minor groove platform
Motif group
IL_97255.1
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

6YAL|1|2|U|1329
6YAL|1|2|G|1330
6YAL|1|2|G|1331
*
6YAL|1|2|U|1488
6YAL|1|2|C|1489
6YAL|1|2|U|1490
6YAL|1|2|G|1491
6YAL|1|2|U|1492
6YAL|1|2|G|1493
6YAL|1|2|A|1494

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain F
40S Ribosomal protein uS3
Chain M
40S ribosomal protein eS10
Chain W
40S ribosomal protein uS10
Chain e
40S ribosomal protein uS14
Chain f
40S ribosomal protein eS31
Chain j
eukaryotic translation initiation factor 1A

Coloring options:


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